STRINGSTRING
PFL_5909 PFL_5909 maiA maiA PFL_5910 PFL_5910 hmgA hmgA PFL_5908 PFL_5908 serA serA PFL_5907 PFL_5907 PFL_5385 PFL_5385 PFL_6269 PFL_6269
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_5909FAH family protein; Identified by match to protein family HMM PF01557. (221 aa)    
Predicted Functional Partners:
maiA
Maleylacetoacetate isomerase; Identified by similarity to SP:O43708; match to protein family HMM PF02798; match to protein family HMM TIGR01262.
  
 
 0.703
PFL_5910
FAD linked oxidase domain protein; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.
     
 0.685
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
  
  
 0.670
PFL_5908
SdiA-regulated domain protein; Identified by match to protein family HMM PF06977.
       0.535
serA
Putative phosphoglycerate dehydrogenase; Identified by similarity to SP:P0A9T0; match to protein family HMM PF00389; match to protein family HMM PF01842; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.502
PFL_5907
SdiA-regulated domain protein; Identified by match to protein family HMM PF06977.
       0.422
PFL_5385
Putative 4-hydroxyphenylpyruvate dioxygenase; Identified by similarity to SP:P80064; match to protein family HMM PF00903; match to protein family HMM PF01261.
  
  
 0.411
PFL_6269
Hypothetical protein.
  
  
 0.405
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.