STRINGSTRING
PFL_5910 PFL_5910 PFL_5909 PFL_5909 serA serA nuoD nuoD PFL_5525 PFL_5525 etfA etfA etfB etfB gltB gltB PFL_5908 PFL_5908 plsB plsB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_5910FAD linked oxidase domain protein; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913. (464 aa)    
Predicted Functional Partners:
PFL_5909
FAH family protein; Identified by match to protein family HMM PF01557.
     
 0.685
serA
Putative phosphoglycerate dehydrogenase; Identified by similarity to SP:P0A9T0; match to protein family HMM PF00389; match to protein family HMM PF01842; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
 0.660
nuoD
NADH-quinone oxidoreductase, C/D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 
 0.628
PFL_5525
Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM PF08241; match to protein family HMM PF08242.
  
     0.506
etfA
Electron transfer flavoprotein, alpha subunit; Identified by similarity to SP:P38974; match to protein family HMM PF00766; match to protein family HMM PF01012.
 
 
 0.480
etfB
Electron transfer flavoprotein, beta subunit; Identified by similarity to SP:P38975; match to protein family HMM PF01012.
 
 
 0.471
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:P09831; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
     
 0.466
PFL_5908
SdiA-regulated domain protein; Identified by match to protein family HMM PF06977.
       0.465
plsB
Glycerol-3-phosphate O-acyltransferase; Identified by match to protein family HMM PF01553; Belongs to the GPAT/DAPAT family.
  
 
 0.416
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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