STRINGSTRING
PFL_6006 PFL_6006 PFL_0521 PFL_0521 PFL_4397 PFL_4397 algZ algZ algK algK algG algG algX algX PFL_1329 PFL_1329 PFL_5238 PFL_5238 oprE oprE PFL_1707 PFL_1707
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_6006Conserved hypothetical protein. (94 aa)    
Predicted Functional Partners:
PFL_0521
Identified by match to protein family HMM PF02585.
  
     0.754
PFL_4397
Conserved hypothetical protein.
  
     0.753
algZ
Alginate biosynthesis transcriptional activator AlgZ; Identified by similarity to GB:AAD55364.1; match to protein family HMM PF03869.
  
     0.732
algK
Alginate biosynthesis protein AlgK; Identified by similarity to GB:AAC38141.1; match to protein family HMM PF08238.
  
     0.716
algG
poly(beta-D-mannuronate) C5 epimerase AlgG; Identified by similarity to SP:Q51371.
  
     0.709
algX
Alginate biosynthesis protein AlgX; Identified by similarity to GB:AAA91126.1.
  
     0.699
PFL_1329
Outer membrane porin, OprD family; Identified by match to protein family HMM PF03573.
  
     0.688
PFL_5238
Conserved hypothetical protein.
  
     0.683
oprE
Outer membrane porin OprE; Identified by similarity to GB:BAA02207.1; match to protein family HMM PF03573.
  
     0.678
PFL_1707
Conserved hypothetical protein.
  
     0.671
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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