PFL_6064 protein (Pseudomonas protegens) - STRING interaction network

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PFL_6064

Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004. (126 aa)

Predicted Functional Partners:

PFL_6065

0.736

spoT

0.732

PFL_5807

0.715

PFL_6037

0.699

PFL_0796

0.616

rpoZ

0.597

rph

0.500

gmk

0.473

PFL_2666

0.462

PFL_6060

0.414

Your Current Organism:

Pseudomonas protegens

NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PFL_0796	PFL_6064	PFL_0796	PFL_6064	Identified by match to protein family HMM PF01042.	Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	0.616
PFL_2666	PFL_6064	PFL_2666	PFL_6064	Identified by match to protein family HMM PF08348.	Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	0.462
PFL_5807	PFL_6064	PFL_5807	PFL_6064	Identified by match to protein family HMM PF01042.	Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	0.715
PFL_6037	PFL_6064	PFL_6037	PFL_6064	Identified by match to protein family HMM PF01042.	Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	0.699
PFL_6060	PFL_6064	PFL_6060	PFL_6064	Conserved hypothetical protein; Identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.	Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	0.414
PFL_6060	gmk	PFL_6060	PFL_6061	Conserved hypothetical protein; Identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.916
PFL_6060	rph	PFL_6060	PFL_6059	Conserved hypothetical protein; Identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.	tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.503
PFL_6060	rpoZ	PFL_6060	PFL_6062	Conserved hypothetical protein; Identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.767
PFL_6060	spoT	PFL_6060	PFL_6063	Conserved hypothetical protein; Identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.	Guanosine-3',5'-bis(diphosphate) 3'-diphosphatase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.	0.445
PFL_6064	PFL_0796	PFL_6064	PFL_0796	Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	Identified by match to protein family HMM PF01042.	0.616
PFL_6064	PFL_2666	PFL_6064	PFL_2666	Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	Identified by match to protein family HMM PF08348.	0.462
PFL_6064	PFL_5807	PFL_6064	PFL_5807	Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	Identified by match to protein family HMM PF01042.	0.715
PFL_6064	PFL_6037	PFL_6064	PFL_6037	Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	Identified by match to protein family HMM PF01042.	0.699
PFL_6064	PFL_6060	PFL_6064	PFL_6060	Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	Conserved hypothetical protein; Identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.	0.414
PFL_6064	PFL_6065	PFL_6064	PFL_6065	Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	Putative lipoprotein.	0.736
PFL_6064	gmk	PFL_6064	PFL_6061	Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.473
PFL_6064	rph	PFL_6064	PFL_6059	Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.500
PFL_6064	rpoZ	PFL_6064	PFL_6062	Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.597
PFL_6064	spoT	PFL_6064	PFL_6063	Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	Guanosine-3',5'-bis(diphosphate) 3'-diphosphatase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.	0.732
PFL_6065	PFL_6064	PFL_6065	PFL_6064	Putative lipoprotein.	Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	0.736

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