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PFL_6072 PFL_6072 PFL_0669 PFL_0669 PFL_5976 PFL_5976 PFL_1644 PFL_1644 PFL_5354 PFL_5354 PFL_6114 PFL_6114 ccmD ccmD PFL_5642 PFL_5642 recG recG PFL_1675 PFL_1675 tonB3 tonB3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PFL_6072HDOD domain protein; Identified by match to protein family HMM PF08668. (466 aa)    
Predicted Functional Partners:
PFL_0669
Conserved domain protein; Identified by match to protein family HMM TIGR02098.
  
     0.736
PFL_5976
Putative flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
     0.729
PFL_1644
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.
 
    0.708
PFL_5354
Type IV pilus assembly protein, PilZ family; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein.
  
    0.695
PFL_6114
Response regulator; Identified by similarity to SP:P0AE67; match to protein family HMM PF00072.
  
    0.681
ccmD
Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
  
     0.675
PFL_5642
Conserved hypothetical protein.
  
    0.671
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
     
 0.657
PFL_1675
Identified by match to protein family HMM PF01584.
 
     0.653
tonB3
Type IV pilus associated protein TonB3; See Shirley and Lamont (PMID: 19592589) for more information; identified by similarity to GB:AAG03795.1; match to protein family HMM TIGR01352.
  
    0.652
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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