STRINGSTRING
tagS tagS tagR tagR ppkA ppkA tagT tagT tagF tagF tssL tssL tssM tssM tssK tssK pppA pppA tssJ tssJ tagQ tagQ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
tagSPutative Lol-like lipoprotein-translocating system, transmembrane protein TagS; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03462.1; match to protein family HMM PF02687. (400 aa)    
Predicted Functional Partners:
tagR
Type VI secretion posttranslational regulatory protein TagR; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03461.1; match to protein family HMM PF03781.
 
    0.976
ppkA
Serine/threonine protein kinase PpkA; Identified by similarity to GB:AAG03464.1; match to protein family HMM PF00069.
 
    0.957
tagT
Putative Lol-like lipoprotein-translocating system, ATP-binding protein TagT; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03463.1; match to protein family HMM PF00005.
 
 
 0.952
tagF
Type VI secretion-associated protein TagF; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03466.1; match to protein family HMM TIGR03373.
 
    0.915
tssL
Type VI secretion protein TssL; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03468.1; match to protein family HMM PF00691; match to protein family HMM TIGR03349; match to protein family HMM TIGR03350.
 
  
 0.885
tssM
Type VI secretion protein TssM; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03467.1; match to protein family HMM PF06744; match to protein family HMM PF06761; match to protein family HMM TIGR03348.
 
    0.864
tssK
Type VI secretion protein TssK; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03469.1; match to protein family HMM PF05936; match to protein family HMM TIGR03353.
 
    0.863
pppA
Serine/threonine phosphoprotein phosphatase PppA; Identified by similarity to GB:AAG03465.1; match to protein family HMM PF00481.
  
    0.861
tssJ
Type VI secretion lipoprotein TssJ; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03470.1; match to protein family HMM TIGR03352.
 
    0.829
tagQ
Putative type VI secretion-associated lipoprotein TagQ; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03460.1; match to protein family HMM PF05433.
  
 
 0.719
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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