STRINGSTRING
tssF tssF tssE tssE tssG tssG tssK tssK tssL tssL tssC tssC tssA tssA clpV clpV tssB tssB tssJ tssJ vgrG vgrG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
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[Homology]
Score
tssFType VI secretion protein TssF; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03478.1; match to protein family HMM PF05947; match to protein family HMM TIGR03359. (619 aa)    
Predicted Functional Partners:
tssE
Type VI secretion protein TssE; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03477.1; match to protein family HMM PF04965; match to protein family HMM TIGR03357.
 
  
 0.994
tssG
Type VI secretion protein TssG; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03479.1; match to protein family HMM PF06996; match to protein family HMM TIGR03347.
 
  
 0.993
tssK
Type VI secretion protein TssK; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03469.1; match to protein family HMM PF05936; match to protein family HMM TIGR03353.
 
 
 0.989
tssL
Type VI secretion protein TssL; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03468.1; match to protein family HMM PF00691; match to protein family HMM TIGR03349; match to protein family HMM TIGR03350.
 
  
 0.983
tssC
Type VI secretion protein TssC; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03474.1; match to protein family HMM PF05943; match to protein family HMM TIGR03355.
 
  
 0.978
tssA
Type VI secretion protein TssA; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03472.1; match to protein family HMM PF06812; match to protein family HMM TIGR03363.
 
  
 0.976
clpV
Type VI secretion ATPase ClpV; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to SP:Q9I742; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03345; Belongs to the ClpA/ClpB family.
 
  
 0.974
tssB
Type VI secretion protein TssB; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03473.1; match to protein family HMM PF05591; match to protein family HMM TIGR03358.
 
  
 0.972
tssJ
Type VI secretion lipoprotein TssJ; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03470.1; match to protein family HMM TIGR03352.
 
  
 0.961
vgrG
Type VI secretion protein VgrG; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03481.1; match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361.
 
  
 0.954
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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