STRINGSTRING
PFL_6095 PFL_6095 PFL_6096 PFL_6096 vgrG vgrG PFL_6209 PFL_6209 PFL_4985 PFL_4985 PFL_6097 PFL_6097 PFL_1556 PFL_1556 PFL_6099 PFL_6099 tssF tssF tssE tssE tssG tssG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_6095Conserved hypothetical protein; Identified by match to protein family HMM PF08786. (141 aa)    
Predicted Functional Partners:
PFL_6096
Rhs family protein; Identified by match to protein family HMM PF03527; match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643; match to protein family HMM TIGR03696.
  
 
 0.995
vgrG
Type VI secretion protein VgrG; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03481.1; match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361.
  
  
 0.860
PFL_6209
PAAR motif containing protein; Identified by match to protein family HMM PF05488.
  
 
 0.777
PFL_4985
Conserved hypothetical protein.
  
 
 0.762
PFL_6097
Conserved hypothetical protein.
       0.721
PFL_1556
Identified by similarity to GB:AAG03431.1; match to protein family HMM PF04830; match to protein family HMM PF05594; match to protein family HMM TIGR01731.
  
 
 0.635
PFL_6099
Conserved hypothetical protein; Identified by match to protein family HMM PF08786.
      
 0.577
tssF
Type VI secretion protein TssF; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03478.1; match to protein family HMM PF05947; match to protein family HMM TIGR03359.
  
  
 0.574
tssE
Type VI secretion protein TssE; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03477.1; match to protein family HMM PF04965; match to protein family HMM TIGR03357.
  
    0.570
tssG
Type VI secretion protein TssG; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03479.1; match to protein family HMM PF06996; match to protein family HMM TIGR03347.
  
    0.533
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.