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PFL_6123 PFL_6123 PFL_5528 PFL_5528 PFL_5529 PFL_5529 PFL_5530 PFL_5530 PFL_6124 PFL_6124 macB1 macB1 macB2 macB2 PFL_1349 PFL_1349 glxK glxK purK purK purE purE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_6123Conserved hypothetical protein. (178 aa)    
Predicted Functional Partners:
PFL_5528
Conserved hypothetical protein.
 
  
 0.866
PFL_5529
Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.791
PFL_5530
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
     0.791
PFL_6124
Transglycosylase associated protein; Identified by match to protein family HMM PF04226.
       0.544
macB1
Efflux ABC transporter, permease/ATP-binding protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.468
macB2
Efflux ABC transporter, ATP-binding/permease protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.468
PFL_1349
Identified by match to protein family HMM PF04264; Belongs to the UPF0312 family.
  
     0.463
glxK
Glycerate kinase; Identified by similarity to SP:Q9Z9P2; match to protein family HMM PF02595; match to protein family HMM TIGR00045; Belongs to the glycerate kinase type-1 family.
   
    0.463
purK
Phosphoribosylaminoimidazole carboxylase, ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).
       0.429
purE
Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.425
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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