STRINGSTRING
PFL_6124 PFL_6124 PFL_3929 PFL_3929 trpS trpS purK purK PFL_1392 PFL_1392 purE purE PFL_6123 PFL_6123 PFL_4231 PFL_4231 PFL_5884 PFL_5884 PFL_2569 PFL_2569 PFL_4596 PFL_4596
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
PFL_6124Transglycosylase associated protein; Identified by match to protein family HMM PF04226. (81 aa)    
Predicted Functional Partners:
PFL_3929
Conserved hypothetical protein.
 
  
 0.586
trpS
tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
 
  
 0.582
purK
Phosphoribosylaminoimidazole carboxylase, ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).
       0.579
PFL_1392
Conserved hypothetical protein; Identified by similarity to SP:P76402; match to protein family HMM PF07411.
 
  
 0.577
purE
Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.573
PFL_6123
Conserved hypothetical protein.
       0.544
PFL_4231
Conserved hypothetical protein; Identified by match to protein family HMM PF05957.
  
  
 0.498
PFL_5884
Conserved hypothetical protein.
 
     0.473
PFL_2569
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.430
PFL_4596
Identified by match to protein family HMM PF05532; Belongs to the UPF0337 (CsbD) family.
  
  
 0.430
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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