STRINGSTRING
PFL_6127 PFL_6127 PFL_3964 PFL_3964 PFL_0766 PFL_0766 PFL_1522 PFL_1522 PFL_3650 PFL_3650 PFL_5891 PFL_5891 PFL_4360 PFL_4360 PFL_5809 PFL_5809 mvaV mvaV pqqH pqqH PFL_4981 PFL_4981
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_6127Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (304 aa)    
Predicted Functional Partners:
PFL_3964
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR03339; Belongs to the LysR transcriptional regulatory family.
  
     0.662
PFL_0766
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.661
PFL_1522
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.658
PFL_3650
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.645
PFL_5891
Aminoethylphosphonate catabolism associated LysR family transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR03339; Belongs to the LysR transcriptional regulatory family.
  
     0.642
PFL_4360
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.630
PFL_5809
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.626
mvaV
Transcriptional regulator MvaV; Identified by similarity to GB:AAX18931.1.
  
     0.616
pqqH
Transcriptional regulator PqqH; Identified by similarity to GB:AAX10031.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.612
PFL_4981
Putative transcriptional regulator; Identified by similarity to GB:AAC46083.1.
  
     0.604
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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