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aphA_3 aphA_3 potF potF PFL_6143 PFL_6143 PFL_6144 PFL_6144 htpG htpG PFL_1033 PFL_1033 PFL_1384 PFL_1384 PFL_5670 PFL_5670 PFL_3336 PFL_3336
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aphA_3Acetylpolyamine aminohydrolase; Identified by similarity to SP:Q48935; match to protein family HMM PF00850. (343 aa)    
Predicted Functional Partners:
potF
Putrescine ABC transporter, periplasmic putrescine-binding protein; Identified by match to protein family HMM PF01547.
  
    0.758
PFL_6143
Conserved hypothetical protein; Identified by match to protein family HMM PF00023.
   
 0.621
PFL_6144
Conserved hypothetical protein; Identified by match to protein family HMM PF00023.
   
 0.621
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.
    
 0.552
PFL_1033
Identified by match to protein family HMM PF00400.
  
 
 0.530
PFL_1384
Monoamine oxidase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR01409.
   
 0.441
PFL_5670
Monoamine oxidase; Identified by similarity to SP:P06617; match to protein family HMM PF01593.
   
 0.441
PFL_3336
Putative lipoprotein; Identified by similarity to PIR:AG0086.
    
 0.440
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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