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PFL_6148 PFL_6148 PFL_5228 PFL_5228 PFL_6147 PFL_6147 PFL_6149 PFL_6149 PFL_6150 PFL_6150 PFL_6151 PFL_6151
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
PFL_6148Transcriptional regulator, GntR family/aminotransferase, classes I and II family protein; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392. (516 aa)    
Predicted Functional Partners:
PFL_5228
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392.
  
     0.768
PFL_6147
Identified by match to protein family HMM PF04143.
       0.671
PFL_6149
Putative negative regulatory protein; Identified by similarity to SP:P21341; match to protein family HMM PF04299.
       0.578
PFL_6150
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.507
PFL_6151
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.477
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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