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PFL_6164 PFL_6164 ispZ ispZ PFL_0904 PFL_0904 PFL_6165 PFL_6165 PFL_6163 PFL_6163 PFL_5001 PFL_5001 PFL_3738 PFL_3738 PFL_0081 PFL_0081 thrB thrB ompR ompR uvrD uvrD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PFL_6164Conserved hypothetical protein; Identified by match to protein family HMM PF04280. (291 aa)    
Predicted Functional Partners:
ispZ
Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
  
    0.598
PFL_0904
Conserved hypothetical protein; Identified by match to protein family HMM PF04751; Belongs to the UPF0307 family.
  
     0.590
PFL_6165
Conserved hypothetical protein; Identified by match to protein family HMM PF09346.
       0.535
PFL_6163
Putative membrane protein; Identified by match to protein family HMM PF00892.
       0.512
PFL_5001
Conserved hypothetical protein.
  
     0.471
PFL_3738
Membrane protein, YccA family; Identified by similarity to SP:P0AAC6; match to protein family HMM PF01027; Belongs to the BI1 family.
   
  
 0.417
PFL_0081
Conserved hypothetical protein.
  
     0.403
thrB
Homoserine kinase; Identified by similarity to SP:P29364; match to protein family HMM PF01636; match to protein family HMM TIGR00938; Belongs to the pseudomonas-type ThrB family.
  
     0.402
ompR
DNA-binding response regulator OmpR; Identified by similarity to SP:P03025; similarity to GB:AAS48175.1; match to protein family HMM PF00072; match to protein family HMM PF00486.
   
  
 0.402
uvrD
DNA helicase II; Identified by similarity to SP:P03018; match to protein family HMM PF00580.
       0.402
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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