STRINGSTRING
PFL_6168 PFL_6168 PFL_3212 PFL_3212 yveA yveA gabP gabP glgE glgE PFL_2873 PFL_2873 treC treC PFL_6167 PFL_6167
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PFL_6168Putrescine:hydrogen symporter, PuuP family; Identified by similarity to SP:P76037; match to protein family HMM PF00324. (470 aa)    
Predicted Functional Partners:
PFL_3212
Amino acid permease, APC family; Identified by match to protein family HMM PF00324.
  
     0.753
yveA
Aspartate:proton symporter YveA; Identified by similarity to SP:O07002; match to protein family HMM PF00324.
  
     0.602
gabP
GABA permease; Identified by match to protein family HMM PF00324; match to protein family HMM PF03845; match to protein family HMM TIGR01773.
  
   
 0.580
glgE
Alpha-amylase family protein; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
   
 0.424
PFL_2873
Putative trehalose synthase/maltokinase; Identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456; match to protein family HMM TIGR02457.
   
 0.424
treC
Alpha,alpha-phosphotrehalase; Identified by similarity to SP:P39795; match to protein family HMM PF00128; match to protein family HMM TIGR02403.
   
 0.424
PFL_6167
Identified by match to protein family HMM PF03061.
       0.421
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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