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PFL_6173 PFL_6173 PFL_6172 PFL_6172 dksA-2 dksA-2 PFL_6171 PFL_6171 folE2-2 folE2-2 PFL_6182 PFL_6182 PFL_6175 PFL_6175 PFL_2596 PFL_2596 rpmE_1 rpmE_1 rpsN rpsN rpmJ rpmJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_6173Identified by match to protein family HMM PF02492; match to protein family HMM PF07683. (402 aa)    
Predicted Functional Partners:
PFL_6172
Conserved hypothetical protein; Identified by match to protein family HMM PF08856.
 
  
 0.972
dksA-2
Putative RNA polymerase-binding protein DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression.
  
  
 0.864
PFL_6171
Cobalamin synthesis protein/P47K family protein; Identified by match to protein family HMM PF02492.
 
  
0.828
folE2-2
Conserved hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.724
PFL_6182
Putative carbonate dehydratase; Identified by similarity to SP:P40881; match to protein family HMM PF00132.
  
  
 0.719
PFL_6175
Conserved hypothetical protein.
  
  
 0.695
PFL_2596
C4-type zinc finger protein, DksA/TraR family; Identified by match to protein family HMM PF01258.
  
  
 0.595
rpmE_1
Ribosomal protein L31; Identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105.
  
  
 0.563
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.543
rpmJ
Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.
  
  
 0.509
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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