STRINGSTRING
PFL_6187 PFL_6187 PFL_5150 PFL_5150 PFL_5151 PFL_5151 PFL_6188 PFL_6188 PFL_6189 PFL_6189 PFL_4656 PFL_4656 rzxA rzxA PFL_4778 PFL_4778 PFL_6190 PFL_6190 PFL_5145 PFL_5145
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_6187Cyclopropane-fatty-acyl-phospholipid synthase; Identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242. (395 aa)    
Predicted Functional Partners:
PFL_5150
Monoamine oxidase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593.
  
 0.963
PFL_5151
Conserved hypothetical protein; Identified by match to protein family HMM PF07103.
  
 0.756
PFL_6188
Conserved hypothetical protein.
       0.576
PFL_6189
Conserved hypothetical protein; Identified by match to protein family HMM PF05114; Belongs to the UPF0276 family.
       0.558
PFL_4656
AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00668.
     
 0.533
rzxA
Polyketide synthase/nonribosomal peptide synthetase hybrid RzxA; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM PF08415.
     
 0.525
PFL_4778
ATP:cob(I)alamin adenosyltransferase; Identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636; Belongs to the Cob(I)alamin adenosyltransferase family.
  
    0.475
PFL_6190
Conserved hypothetical protein; Identified by similarity to GB:AAQ87464.1.
       0.439
PFL_5145
Conserved hypothetical protein; Identified by match to protein family HMM PF04463; match to protein family HMM PF08349.
     
 0.400
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.