STRINGSTRING
PP_2612 PP_2612 PP_2611 PP_2611 PP_2610 PP_2610 PP_2613 PP_2613 vgrG-I vgrG-I hcpC-I hcpC-I
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2612Homologs of previously reported genes of unknown function. (996 aa)    
Predicted Functional Partners:
PP_2611
Membrane protein of unknown function; No homology to any previously reported sequences.
  
    0.782
PP_2610
Homologs of previously reported genes of unknown function.
  
    0.778
PP_2613
Homologs of previously reported genes of unknown function.
       0.777
vgrG-I
Type 6 secretion system protein; Function of strongly homologous gene; regulator.
       0.777
hcpC-I
Hemolysin-coregulated protein; Function of strongly homologous gene; factor.
       0.566
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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