STRINGSTRING
PP_3107 PP_3107 PP_3108 PP_3108 PP_4085 PP_4085 PP_3106 PP_3106 PP_5575 PP_5575 PP_5576 PP_5576 PP_5371 PP_5371 PP_3105 PP_3105 PP_3104 PP_3104 PP_3103 PP_3103 PP_0646 PP_0646
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_3107Homologs of previously reported genes of unknown function. (173 aa)    
Predicted Functional Partners:
PP_3108
Rhs-related protein.
  
 
 0.976
PP_4085
Putative RHS family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.899
PP_3106
Homologs of previously reported genes of unknown function.
  
  
 0.785
PP_5575
Homologs of previously reported genes of unknown function; Unknown function.
       0.773
PP_5576
Homologs of previously reported genes of unknown function; Unknown function.
       0.773
PP_5371
Rubredoxin/rubredoxin reductase; Belongs to the FAD-dependent oxidoreductase family.
   
    0.687
PP_3105
Homologs of previously reported genes of unknown function.
  
    0.677
PP_3104
Homologs of previously reported genes of unknown function; Unknown function.
       0.675
PP_3103
Homologs of previously reported genes of unknown function; Unknown function.
  
 
 0.598
PP_0646
Homologs of previously reported genes of unknown function.
  
 
 0.596
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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