STRINGSTRING
AEA67527.1 AEA67527.1 AEA67528.1 AEA67528.1 AEA67529.1 AEA67529.1 AEA67530.1 AEA67530.1 AEA68054.1 AEA68054.1 AEA68053.1 AEA68053.1 rpoC rpoC rpoB rpoB AEA68671.1 AEA68671.1 AEA68674.1 AEA68674.1 AEA70306.1 AEA70306.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurrence
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[Homology]
Score
AEA67527.1RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)    
Predicted Functional Partners:
AEA67528.1
Anti-sigma factor MucA.
 
 
 0.968
AEA67529.1
Negative regulator for alginate biosynthesis.
 
 
 0.918
AEA67530.1
Serine protease precursor; Belongs to the peptidase S1C family.
     
 0.608
AEA68054.1
Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.605
AEA68053.1
Putative anti-sigma factor.
  
 
 0.579
rpoC
DNA-directed RNA polymerase, beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.523
rpoB
DNA-directed RNA polymerase, beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.514
AEA68671.1
Putative peptide synthase.
  
  
 0.504
AEA68674.1
Putative peptide synthase.
  
  
 0.490
AEA70306.1
Pyoverdine synthetase.
  
  
 0.490
Your Current Organism:
Pseudomonas brassicacearum
NCBI taxonomy Id: 994484
Other names: P. brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum CFBP 11874, Pseudomonas brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum str. NFM421, Pseudomonas brassicacearum subsp. brassicacearum strain NFM421
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