STRINGSTRING
AEA67529.1 AEA67529.1 AEA67528.1 AEA67528.1 AEA67527.1 AEA67527.1 AEA67530.1 AEA67530.1 AEA69600.1 AEA69600.1 AEA67246.1 AEA67246.1 AEA67815.1 AEA67815.1 recO recO AEA67889.1 AEA67889.1 AEA66951.1 AEA66951.1 AEA71048.1 AEA71048.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEA67529.1Negative regulator for alginate biosynthesis. (315 aa)    
Predicted Functional Partners:
AEA67528.1
Anti-sigma factor MucA.
 
 
 0.996
AEA67527.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.918
AEA67530.1
Serine protease precursor; Belongs to the peptidase S1C family.
  
  
 0.677
AEA69600.1
Conserved hypothetical protein.
  
     0.670
AEA67246.1
Putative protease; putative membrane protein.
  
  
 0.545
AEA67815.1
Putative Transcription factor, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.537
recO
DNA repair protein; Involved in DNA repair and RecF pathway recombination.
 
    0.523
AEA67889.1
Putative ECF sigma factor SigX; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.490
AEA66951.1
Putative inner membrane protein; CobD/Cbib protein.
  
     0.482
AEA71048.1
Putative lipoprotein.
  
     0.478
Your Current Organism:
Pseudomonas brassicacearum
NCBI taxonomy Id: 994484
Other names: P. brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum CFBP 11874, Pseudomonas brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum str. NFM421, Pseudomonas brassicacearum subsp. brassicacearum strain NFM421
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