Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEA67654.1 | AEA67658.1 | PSEBR_a1459 | PSEBR_a1463 | Flagellar basal-body rod protein. | Peptidoglycan hydrolase. | 0.999 |
AEA67654.1 | AEA67659.1 | PSEBR_a1459 | PSEBR_a1464 | Flagellar basal-body rod protein. | Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family. | 0.986 |
AEA67654.1 | AEA67674.1 | PSEBR_a1459 | PSEBR_a1479 | Flagellar basal-body rod protein. | Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.953 |
AEA67654.1 | AEA67677.1 | PSEBR_a1459 | PSEBR_a1482 | Flagellar basal-body rod protein. | Flagellar biosynthesis chaperone. | 0.885 |
AEA67654.1 | AEA67683.1 | PSEBR_a1459 | PSEBR_a1488 | Flagellar basal-body rod protein. | Flagellar motor switch protein; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.974 |
AEA67654.1 | AEA67685.1 | PSEBR_a1459 | PSEBR_a1490 | Flagellar basal-body rod protein. | Flagellar protein. | 0.955 |
AEA67654.1 | AEA67704.1 | PSEBR_a1459 | PSEBR_a1509 | Flagellar basal-body rod protein. | Conserved hypothetical protein, FlhB domain-containing protein. | 0.470 |
AEA67654.1 | AEA67705.1 | PSEBR_a1459 | PSEBR_a1510 | Flagellar basal-body rod protein. | Conserved hypothetical protein. | 0.888 |
AEA67654.1 | AEA70696.1 | PSEBR_a1459 | PSEBR_a4287 | Flagellar basal-body rod protein. | Putative flagellar basal-body rod protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. | 0.991 |
AEA67654.1 | AEA71954.1 | PSEBR_a1459 | PSEBR_a5441 | Flagellar basal-body rod protein. | Putative flagellar basal body-associated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | 0.932 |
AEA67658.1 | AEA67654.1 | PSEBR_a1463 | PSEBR_a1459 | Peptidoglycan hydrolase. | Flagellar basal-body rod protein. | 0.999 |
AEA67658.1 | AEA67659.1 | PSEBR_a1463 | PSEBR_a1464 | Peptidoglycan hydrolase. | Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family. | 0.999 |
AEA67658.1 | AEA67674.1 | PSEBR_a1463 | PSEBR_a1479 | Peptidoglycan hydrolase. | Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.995 |
AEA67658.1 | AEA67677.1 | PSEBR_a1463 | PSEBR_a1482 | Peptidoglycan hydrolase. | Flagellar biosynthesis chaperone. | 0.969 |
AEA67658.1 | AEA67683.1 | PSEBR_a1463 | PSEBR_a1488 | Peptidoglycan hydrolase. | Flagellar motor switch protein; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.996 |
AEA67658.1 | AEA67685.1 | PSEBR_a1463 | PSEBR_a1490 | Peptidoglycan hydrolase. | Flagellar protein. | 0.993 |
AEA67658.1 | AEA67705.1 | PSEBR_a1463 | PSEBR_a1510 | Peptidoglycan hydrolase. | Conserved hypothetical protein. | 0.982 |
AEA67658.1 | AEA70696.1 | PSEBR_a1463 | PSEBR_a4287 | Peptidoglycan hydrolase. | Putative flagellar basal-body rod protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. | 0.999 |
AEA67658.1 | AEA71954.1 | PSEBR_a1463 | PSEBR_a5441 | Peptidoglycan hydrolase. | Putative flagellar basal body-associated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | 0.991 |
AEA67659.1 | AEA67654.1 | PSEBR_a1464 | PSEBR_a1459 | Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family. | Flagellar basal-body rod protein. | 0.986 |
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