STRINGSTRING
AEA69138.1 AEA69138.1 AEA69405.1 AEA69405.1 ku ku polA polA AEA69135.1 AEA69135.1 PSEBR_a2 PSEBR_a2 AEA69754.1 AEA69754.1 AEA69136.1 AEA69136.1 AEA69137.1 AEA69137.1 AEA67335.1 AEA67335.1 AEA71487.1 AEA71487.1
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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experimentally determined
Predicted Interactions
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gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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AEA69138.1Putative DNA ligase (ATP). (871 aa)    
Predicted Functional Partners:
AEA69405.1
Putative ATP-dependent DNA ligase.
 
  
0.949
ku
Conserved hypothetical protein, KU domain-containing protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
  
 0.947
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.899
AEA69135.1
Conserved hypothetical protein.
  
    0.877
PSEBR_a2
DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 0.868
AEA69754.1
Putative DNA topoisomerase.
 
 
 
 0.824
AEA69136.1
Conserved hypothetical protein, containing Methyltransferase small domain; Belongs to the methyltransferase superfamily.
       0.807
AEA69137.1
Putative carboxylate-amine ligase, Glutamate-cysteine ligase family 2(GCS2); ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
       0.776
AEA67335.1
Conserved hypothetical protein; putative mRNA 3\-end processing factor.
 
 0.753
AEA71487.1
Conserved hypothetical protein.
 
    0.749
Your Current Organism:
Pseudomonas brassicacearum
NCBI taxonomy Id: 994484
Other names: P. brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum CFBP 11874, Pseudomonas brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum str. NFM421, Pseudomonas brassicacearum subsp. brassicacearum strain NFM421
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