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rlmD rlmD AEA70669.1 AEA70669.1 AEA70667.1 AEA70667.1 rlmB rlmB PSEBR_a76 PSEBR_a76 AEA70670.1 AEA70670.1 lysS lysS truB truB rsmI rsmI rsmG rsmG AEA70666.1 AEA70666.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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rlmD23S rRNA (uracil-5-)-methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. (456 aa)    
Predicted Functional Partners:
AEA70669.1
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
    0.832
AEA70667.1
GTP diphosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
     0.664
rlmB
Putative 23S rRNA (guanosine-2-o-)-methyltransferase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA.
 
  
 0.586
PSEBR_a76
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.575
AEA70670.1
Two-component system, sensor kinase GacS.
  
    0.572
lysS
lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
  
 0.570
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
  
 0.568
rsmI
Conserved hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
  
 0.563
rsmG
Putative glucose inhibited division protein B methyltransferase; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
    0.549
AEA70666.1
Hypothetical nucleoside triphosphate pyrophosphohydrolase.
 
     0.529
Your Current Organism:
Pseudomonas brassicacearum
NCBI taxonomy Id: 994484
Other names: P. brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum CFBP 11874, Pseudomonas brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum str. NFM421, Pseudomonas brassicacearum subsp. brassicacearum strain NFM421
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