STRINGSTRING
PSEBR_a45 PSEBR_a45 PSEBR_a47 PSEBR_a47 PSEBR_a44 PSEBR_a44 AEA69732.1 AEA69732.1 AEA66336.1 AEA66336.1 AEA68442.1 AEA68442.1 PSEBR_a43 PSEBR_a43 AEA70924.1 AEA70924.1 AEA68532.1 AEA68532.1 AEA71749.1 AEA71749.1 AEA70295.1 AEA70295.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSEBR_a45Putative diguanylate cyclase. (700 aa)    
Predicted Functional Partners:
PSEBR_a47
Putative c-di-GMP phosphodiesterase.
 
   
 0.882
PSEBR_a44
Putative endonuclease/exonuclease/phosphatase.
  
    0.845
AEA69732.1
Putative c-di-GMP phosphodiesterase.
 
  
 0.827
AEA66336.1
Putative diguanylate cyclase/phosphodiesterase.
 
  
 0.815
AEA68442.1
Putative c-di-GMP phosphodiesterase.
 
  
 0.810
PSEBR_a43
Thiol:disulfide interchange protein.
       0.775
AEA70924.1
Putative response regulator, PleD/VieA family.
 
 
0.632
AEA68532.1
Putative response regulator, RpfG family.
 
  
 0.606
AEA71749.1
Putative response regulator, PleD/VieA family.
 
 
0.594
AEA70295.1
Putative Histidine kinase, Unorthodox.
 
 
 0.587
Your Current Organism:
Pseudomonas brassicacearum
NCBI taxonomy Id: 994484
Other names: P. brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum CFBP 11874, Pseudomonas brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum str. NFM421, Pseudomonas brassicacearum subsp. brassicacearum strain NFM421
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