STRINGSTRING
PSEBR_a48 PSEBR_a48 PSEBR_a49 PSEBR_a49 AEA66309.1 AEA66309.1 AEA69718.1 AEA69718.1 AEA67389.1 AEA67389.1 AEA70768.1 AEA70768.1 AEA66255.1 AEA66255.1 AEA71810.1 AEA71810.1 AEA69258.1 AEA69258.1 AEA70002.1 AEA70002.1 AEA71662.1 AEA71662.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSEBR_a48Putative alginate biosynthesis sensor protein. (596 aa)    
Predicted Functional Partners:
PSEBR_a49
Putative alginate biosynthesis transcriptional regulatory protein.
 
 0.986
AEA66309.1
Putative response regulator, RpfG family.
 
 
 0.790
AEA69718.1
Putative Response regulator, OmpR family.
 
 0.790
AEA67389.1
Putative two-component Response regulator, OmpR family.
 
 0.762
AEA70768.1
Putative response regulator, OmpR family.
 
 
 0.755
AEA66255.1
Putative Response regulator, CheY family.
 
 
 0.754
AEA71810.1
Putative response regulator, CheY family.
 
 0.744
AEA69258.1
Putative two-component system, response regulator.
 
 
 
 0.733
AEA70002.1
Putative Response regulator, OmpR family.
 
 0.727
AEA71662.1
Putative response regulator, CheY family.
 
 
 0.726
Your Current Organism:
Pseudomonas brassicacearum
NCBI taxonomy Id: 994484
Other names: P. brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum CFBP 11874, Pseudomonas brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum str. NFM421, Pseudomonas brassicacearum subsp. brassicacearum strain NFM421
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