STRINGSTRING
PSEBR_a56 PSEBR_a56 PSEBR_a57 PSEBR_a57 PSEBR_a55 PSEBR_a55 AEA67019.1 AEA67019.1 AEA67020.1 AEA67020.1 PSEBR_a54 PSEBR_a54 AEA67018.1 AEA67018.1 AEA67022.1 AEA67022.1 AEA67021.1 AEA67021.1 PSEBR_a58 PSEBR_a58 AEA67678.1 AEA67678.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSEBR_a56Putative ABC transporter, ATP-binding component. (267 aa)    
Predicted Functional Partners:
PSEBR_a57
Putative ABC transporter, permease component.
 
 0.998
PSEBR_a55
Conserved hypothetical protein.
 0.996
AEA67019.1
Putative ABC transporter, membrane protein.
 
 0.975
AEA67020.1
Putative ABC transporter, substrate-binding component.
  
 0.962
PSEBR_a54
Putative lipoprotein.
 
    0.959
AEA67018.1
Putative ABC transporter, ATP-binding component.
  
  
 
0.911
AEA67022.1
Conserved hypothetical protein.
  
 0.898
AEA67021.1
Putative ABC transporter, permease component.
  
 
 0.882
PSEBR_a58
Conserved hypothetical protein.
       0.657
AEA67678.1
Putative anit sigma factor antagonist.
   
   0.539
Your Current Organism:
Pseudomonas brassicacearum
NCBI taxonomy Id: 994484
Other names: P. brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum CFBP 11874, Pseudomonas brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum str. NFM421, Pseudomonas brassicacearum subsp. brassicacearum strain NFM421
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