STRINGSTRING
AEA66797.1 AEA66797.1 AEA66796.1 AEA66796.1 AEA66794.1 AEA66794.1 cmoM cmoM AEA66793.1 AEA66793.1 AEA71132.1 AEA71132.1 AEA68040.1 AEA68040.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEA66797.1Putative lipoprotein. (185 aa)    
Predicted Functional Partners:
AEA66796.1
Putative lipoprotein.
      
0.756
AEA66794.1
Conserved hypothetical protein.
       0.708
cmoM
Putative methyltransferase; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family.
       0.697
AEA66793.1
Conserved hypothetical protein.
 
     0.621
AEA71132.1
Putative HopJ type III effector protein.
  
     0.546
AEA68040.1
Putative 1-aminocyclopropane-1-carboxylate deaminase.
 
     0.467
Your Current Organism:
Pseudomonas brassicacearum
NCBI taxonomy Id: 994484
Other names: P. brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum CFBP 11874, Pseudomonas brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum str. NFM421, Pseudomonas brassicacearum subsp. brassicacearum strain NFM421
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