STRINGSTRING
PSEBR_a65 PSEBR_a65 PSEBR_a66 PSEBR_a66 AEA71859.1 AEA71859.1 AEA67651.1 AEA67651.1 PSEBR_a64 PSEBR_a64 AEA70304.1 AEA70304.1 betA betA AEA67784.1 AEA67784.1 PSEBR_a67 PSEBR_a67 AEA72076.1 AEA72076.1 rpoA rpoA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSEBR_a65Putative choline-sulfatase. (510 aa)    
Predicted Functional Partners:
PSEBR_a66
Putative ABC transporter, periplasmic component.
 
     0.784
AEA71859.1
Conserved hypothetical protein.
 
     0.663
AEA67651.1
Conserved hypothetical protein.
  
   
 0.648
PSEBR_a64
Putative transcription factor, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.642
AEA70304.1
Conserved hypothetical protein.
 
   0.604
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
    
 0.601
AEA67784.1
Conserved hypothetical protein.
  
     0.573
PSEBR_a67
Putative ABC transporter, permease component.
     
 0.553
AEA72076.1
Putative ABC transporter, periplasmic component.
  
   0.548
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.522
Your Current Organism:
Pseudomonas brassicacearum
NCBI taxonomy Id: 994484
Other names: P. brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum CFBP 11874, Pseudomonas brassicacearum subsp. brassicacearum NFM421, Pseudomonas brassicacearum subsp. brassicacearum str. NFM421, Pseudomonas brassicacearum subsp. brassicacearum strain NFM421
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