Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEA66201.1 | PSEBR_a78 | PSEBR_cmegm4 | PSEBR_a78 | Hypothetical protein. | Conserved hypothetical protein. | 0.504 |
AEA67269.1 | PSEBR_a78 | PSEBR_a1095 | PSEBR_a78 | Putative lipoprotein. | Conserved hypothetical protein. | 0.406 |
AEA68025.1 | PSEBR_a78 | PSEBR_a1809 | PSEBR_a78 | Conserved hypothetical protein; putative lipoprotein. | Conserved hypothetical protein. | 0.463 |
AEA71570.1 | PSEBR_a78 | PSEBR_a5120 | PSEBR_a78 | Putative carboxylesterase. | Conserved hypothetical protein. | 0.413 |
AEA71947.1 | PSEBR_a78 | PSEBR_a5435 | PSEBR_a78 | Conserved hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. | Conserved hypothetical protein. | 0.404 |
PSEBR_a76 | PSEBR_a77 | PSEBR_a76 | PSEBR_a77 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Trk system potassium uptake protein. | 0.851 |
PSEBR_a76 | PSEBR_a78 | PSEBR_a76 | PSEBR_a78 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Conserved hypothetical protein. | 0.530 |
PSEBR_a76 | def-2 | PSEBR_a76 | PSEBR_a74 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.772 |
PSEBR_a76 | fmt | PSEBR_a76 | PSEBR_a75 | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.972 |
PSEBR_a77 | PSEBR_a76 | PSEBR_a77 | PSEBR_a76 | Trk system potassium uptake protein. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.851 |
PSEBR_a77 | PSEBR_a78 | PSEBR_a77 | PSEBR_a78 | Trk system potassium uptake protein. | Conserved hypothetical protein. | 0.543 |
PSEBR_a77 | def-2 | PSEBR_a77 | PSEBR_a74 | Trk system potassium uptake protein. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.583 |
PSEBR_a77 | fmt | PSEBR_a77 | PSEBR_a75 | Trk system potassium uptake protein. | Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.780 |
PSEBR_a78 | AEA66201.1 | PSEBR_a78 | PSEBR_cmegm4 | Conserved hypothetical protein. | Hypothetical protein. | 0.504 |
PSEBR_a78 | AEA67269.1 | PSEBR_a78 | PSEBR_a1095 | Conserved hypothetical protein. | Putative lipoprotein. | 0.406 |
PSEBR_a78 | AEA68025.1 | PSEBR_a78 | PSEBR_a1809 | Conserved hypothetical protein. | Conserved hypothetical protein; putative lipoprotein. | 0.463 |
PSEBR_a78 | AEA71570.1 | PSEBR_a78 | PSEBR_a5120 | Conserved hypothetical protein. | Putative carboxylesterase. | 0.413 |
PSEBR_a78 | AEA71947.1 | PSEBR_a78 | PSEBR_a5435 | Conserved hypothetical protein. | Conserved hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division. | 0.404 |
PSEBR_a78 | PSEBR_a76 | PSEBR_a78 | PSEBR_a76 | Conserved hypothetical protein. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.530 |
PSEBR_a78 | PSEBR_a77 | PSEBR_a78 | PSEBR_a77 | Conserved hypothetical protein. | Trk system potassium uptake protein. | 0.543 |
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