potA protein (Pseudomonas entomophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

potA

Putative polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (373 aa)

Predicted Functional Partners:

PSEEN0440

0.929

PSEEN0439

0.926

PSEEN0441

0.922

PSEEN3040

0.849

PSEEN3039

0.837

PSEEN3038

0.731

potH

0.720

potI

0.694

PSEEN1239

0.625

PSEEN1240

0.620

Your Current Organism:

Pseudomonas entomophila

NCBI taxonomy Id: 384676
Other names: P. entomophila L48, Pseudomonas entomophila L48, Pseudomonas entomophila str. L48, Pseudomonas entomophila strain L48

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PSEEN0439	PSEEN0440	PSEEN0439	PSEEN0440	Putative polyamine ABC transporter, periplasmic polyamine-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	0.932
PSEEN0439	PSEEN0441	PSEEN0439	PSEEN0441	Putative polyamine ABC transporter, periplasmic polyamine-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	0.926
PSEEN0439	PSEEN1240	PSEEN0439	PSEEN1240	Putative polyamine ABC transporter, periplasmic polyamine-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	0.409
PSEEN0439	PSEEN3039	PSEEN0439	PSEEN3039	Putative polyamine ABC transporter, periplasmic polyamine-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	0.612
PSEEN0439	PSEEN3040	PSEEN0439	PSEEN3040	Putative polyamine ABC transporter, periplasmic polyamine-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	0.680
PSEEN0439	potA	PSEEN0439	PSEEN0438	Putative polyamine ABC transporter, periplasmic polyamine-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.926
PSEEN0439	potH	PSEEN0439	PSEEN5292	Putative polyamine ABC transporter, periplasmic polyamine-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putrescine ABC transporter, permease protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.	0.410
PSEEN0440	PSEEN0439	PSEEN0440	PSEEN0439	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative polyamine ABC transporter, periplasmic polyamine-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	0.932
PSEEN0440	PSEEN0441	PSEEN0440	PSEEN0441	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	0.987
PSEEN0440	PSEEN1239	PSEEN0440	PSEEN1239	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	0.771
PSEEN0440	PSEEN3038	PSEEN0440	PSEEN3038	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative polyamine ABC transporter, periplasmic polyamine-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	0.845
PSEEN0440	PSEEN3040	PSEEN0440	PSEEN3040	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	0.932
PSEEN0440	potA	PSEEN0440	PSEEN0438	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.929
PSEEN0440	potI	PSEEN0440	PSEEN5291	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putrescine ABC transporter, permease protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.	0.846
PSEEN0441	PSEEN0439	PSEEN0441	PSEEN0439	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative polyamine ABC transporter, periplasmic polyamine-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	0.926
PSEEN0441	PSEEN0440	PSEEN0441	PSEEN0440	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	0.987
PSEEN0441	PSEEN1240	PSEEN0441	PSEEN1240	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	0.581
PSEEN0441	PSEEN3038	PSEEN0441	PSEEN3038	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative polyamine ABC transporter, periplasmic polyamine-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	0.818
PSEEN0441	PSEEN3039	PSEEN0441	PSEEN3039	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	0.927
PSEEN0441	potA	PSEEN0441	PSEEN0438	Putative polyamine ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.	Putative polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.922

page 1 of 4

Server load: low (8%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About