STRINGSTRING
PSEEN1045 PSEEN1045 PSEEN1046 PSEEN1046 PSEEN1044 PSEEN1044 prfC prfC PSEEN1041 PSEEN1041 PSEEN1043 PSEEN1043 PSEEN4321 PSEEN4321 PSEEN0403 PSEEN0403 PSEEN2902 PSEEN2902
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSEEN1045Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (75 aa)    
Predicted Functional Partners:
PSEEN1046
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
 
    0.955
PSEEN1044
Hypothetical protein; No homology to any previously reported sequences.
       0.642
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
       0.526
PSEEN1041
Putative glycine betaine/carnitine/choline ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
 
     0.476
PSEEN1043
Putative glycine betaine/carnitine/choline ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
 
     0.471
PSEEN4321
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
   
 0.452
PSEEN0403
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.425
PSEEN2902
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
     0.406
Your Current Organism:
Pseudomonas entomophila
NCBI taxonomy Id: 384676
Other names: P. entomophila L48, Pseudomonas entomophila L48, Pseudomonas entomophila str. L48, Pseudomonas entomophila strain L48
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