STRINGSTRING
rfaP rfaP rfaG rfaG rfaC rfaC rfaF rfaF PSEEN5139 PSEEN5139 PSEEN5138 PSEEN5138 PSEEN5137 PSEEN5137 waaA waaA PSEEN4455 PSEEN4455 PSEEN5245 PSEEN5245 PSEEN5244 PSEEN5244
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaPLipopolysaccharide core biosynthesis; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family. (268 aa)    
Predicted Functional Partners:
rfaG
Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.997
rfaC
ADP-heptose; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.992
rfaF
ADP-heptose; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.989
PSEEN5139
Putative heptose kinase WapP; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
 
 0.971
PSEEN5138
Putative heptose kinase WapQ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
 
 0.963
PSEEN5137
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.960
waaA
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase); Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.912
PSEEN4455
Putative Lipopolysaccharide kinase InaA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
 
 0.866
PSEEN5245
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.764
PSEEN5244
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.747
Your Current Organism:
Pseudomonas entomophila
NCBI taxonomy Id: 384676
Other names: P. entomophila L48, Pseudomonas entomophila L48, Pseudomonas entomophila str. L48, Pseudomonas entomophila strain L48
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