STRINGSTRING
Spro_1840 Spro_1840 Spro_1841 Spro_1841 Spro_1843 Spro_1843 Spro_1842 Spro_1842 proC proC Spro_1839 Spro_1839 Spro_1838 Spro_1838 Spro_1837 Spro_1837 Spro_3024 Spro_3024 Spro_1835 Spro_1835 Spro_0641 Spro_0641
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Spro_1840PFAM: proline racemase; KEGG: pap:PSPA7_4122 hypothetical protein. (315 aa)    
Predicted Functional Partners:
Spro_1841
PFAM: FAD dependent oxidoreductase; KEGG: plu:plu2242 hypothetical protein.
 
  
 0.993
Spro_1843
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bur:Bcep18194_B1891 pyridine nucleotide-disulphide oxidoreductase.
 
  
  0.991
Spro_1842
PFAM: ferredoxin; KEGG: bam:Bamb_3552 ferredoxin.
 
  
  0.987
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.921
Spro_1839
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; PAS fold-4 domain protein; KEGG: plu:plu2244 hypothetical protein.
 
     0.802
Spro_1838
PFAM: dihydrodipicolinate synthetase; KEGG: bch:Bcen2424_4139 dihydrodipicolinate synthetase; Belongs to the DapA family.
 
  
 0.799
Spro_1837
PFAM: aldehyde dehydrogenase; KEGG: pae:PA2217 probable aldehyde dehydrogenase.
 
 
 
 0.720
Spro_3024
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: stp:Strop_0460 ornithine cyclodeaminase/mu-crystallin.
 
   
 0.566
Spro_1835
PFAM: Malate/L-lactate dehydrogenase; KEGG: kpn:KPN_04791 putative dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
   
 0.506
Spro_0641
PFAM: amidohydrolase 2; KEGG: bvi:Bcep1808_3379 amidohydrolase 2.
  
     0.430
Your Current Organism:
Serratia proteamaculans
NCBI taxonomy Id: 399741
Other names: S. proteamaculans 568, Serratia proteamaculans 568, Serratia proteamaculans str. 568, Serratia proteamaculans strain 568
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