STRINGSTRING
EEF63256.1 EEF63256.1 rpoB rpoB rpoA rpoA EEF61400.1 EEF61400.1 rpoC rpoC EEF63255.1 EEF63255.1 EEF63257.1 EEF63257.1 EEF62353.1 EEF62353.1 EEF57348.1 EEF57348.1 EEF57350.1 EEF57350.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
EEF63256.1KEGG: pap:PSPA7_4357 hypothetical protein. (159 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.942
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.932
EEF61400.1
KEGG: pcu:pc0605 DNA-directed RNA polymerase subunit beta'.
  
 
 0.896
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.883
EEF63255.1
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: bac:BamMC406_3736 peptidylprolyl isomerase FKBP-type.
       0.572
EEF63257.1
KEGG: aba:Acid345_4344 hypothetical protein.
       0.506
EEF62353.1
PFAM: regulatory protein GntR HTH; KEGG: lsa:LSA1861 AraC family regulator.
    
   0.476
EEF57348.1
KEGG: min:Minf_2124 polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein.
  
  
 0.450
EEF57350.1
PFAM: pseudouridine synthase; KEGG: hau:Haur_3492 pseudouridine synthase.
 
     0.402
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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