STRINGSTRING
GM21_1246 GM21_1246 GM21_1247 GM21_1247 GM21_1245 GM21_1245 GM21_0627 GM21_0627 GM21_1248 GM21_1248 GM21_1074 GM21_1074 metK metK GM21_3725 GM21_3725 GM21_0946 GM21_0946 GM21_0262 GM21_0262 GM21_2623 GM21_2623
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_1246KEGG: pap:PSPA7_4430 hypothetical protein. (449 aa)    
Predicted Functional Partners:
GM21_1247
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: bxe:Bxe_B0141 DEAD/DEAH box helicase.
 
     0.953
GM21_1245
KEGG: pmy:Pmen_3424 hypothetical protein.
 
     0.952
GM21_0627
PFAM: homocysteine S-methyltransferase; methylenetetrahydrofolate reductase; KEGG: gbm:Gbem_0613 homocysteine S-methyltransferase.
   
  
 0.819
GM21_1248
KEGG: sbn:Sbal195_1984 hypothetical protein.
       0.773
GM21_1074
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_3187 NADH ubiquinone oxidoreductase 20 kDa subunit.
    
   0.761
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
  
  
 0.582
GM21_3725
PFAM: ABC-3 protein; iron dependent repressor; transport system permease protein; SMART: iron dependent repressor; KEGG: gbm:Gbem_3621 ABC-3 protein.
   
 
 0.540
GM21_0946
PFAM: methylenetetrahydrofolate reductase; KEGG: gbm:Gbem_3302 methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
   
  
 0.539
GM21_0262
PFAM: homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; dihydropteroate synthase DHPS; KEGG: gbm:Gbem_0277 homocysteine S-methyltransferase.
   
  
 0.484
GM21_2623
PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor; KEGG: gbm:Gbem_1590 iron (metal) dependent repressor, DtxR family.
   
   0.481
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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