STRINGSTRING
Slit_1188 Slit_1188 Slit_1189 Slit_1189 prpB prpB Slit_1836 Slit_1836 Slit_1187 Slit_1187 sat sat gatA gatA Slit_1305 Slit_1305 folD folD Slit_0968 Slit_0968 Slit_1263 Slit_1263
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Slit_1188TIGRFAM: 2-methylcitrate dehydratase; KEGG: pap:PSPA7_4727 2-methylcitrate dehydratase; PFAM: MmgE/PrpD family protein. (495 aa)    
Predicted Functional Partners:
Slit_1189
TIGRFAM: 2-methylcitrate synthase/citrate synthase II; KEGG: bgl:bglu_2g21700 citrate synthase; PFAM: Citrate synthase; Belongs to the citrate synthase family.
 
 0.998
prpB
Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.
 
  
 0.978
Slit_1836
TIGRFAM: citrate synthase I; KEGG: cvi:CV_1070 type II citrate synthase; PFAM: Citrate synthase; Belongs to the citrate synthase family.
 
 
 0.843
Slit_1187
PFAM: AMP-dependent synthetase and ligase; KEGG: abo:ABO_1731 acetyl-CoA synthetase.
 
  
 0.760
sat
TIGRFAM: sulfate adenylyltransferase; KEGG: tgr:Tgr7_0353 sulfate adenylyltransferase; PFAM: ATP-sulfurylase; Belongs to the sulfate adenylyltransferase family.
 
 
    0.728
gatA
glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
 
      0.672
Slit_1305
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 
 0.666
folD
Methylenetetrahydrofolate dehydrogenase (NADP(+)); Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
 
      0.500
Slit_0968
TIGRFAM: isocitrate dehydrogenase, NADP-dependent; KEGG: mag:amb0607 monomeric isocitrate dehydrogenase; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; Belongs to the monomeric-type IDH family.
     
  0.499
Slit_1263
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.469
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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