STRINGSTRING
Smal_2217 Smal_2217 Smal_2218 Smal_2218 Smal_2216 Smal_2216 Smal_2219 Smal_2219 Smal_2220 Smal_2220 Smal_2209 Smal_2209 Smal_2210 Smal_2210 Smal_2211 Smal_2211 Smal_2212 Smal_2212 Smal_2213 Smal_2213 Smal_2214 Smal_2214
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smal_2217KEGG: pap:PSPA7_4820 hypothetical protein. (183 aa)    
Predicted Functional Partners:
Smal_2218
KEGG: mms:mma_2362 Fe2+-dicitrate sensor, membrane component.
       0.598
Smal_2216
Hypothetical protein; KEGG: pfl:PFL_2819 prevent-host-death family protein.
      
0.504
Smal_2219
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_2370 RNA polymerase sigma-70 factor, ECF subfamily.
       0.455
Smal_2220
PFAM: Secretin/TonB short domain; KEGG: bur:Bcep18194_B1075 hypothetical protein.
       0.436
Smal_2209
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: pae:PA0687 probable type II secretion system protein.
       0.404
Smal_2210
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
       0.404
Smal_2211
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: pen:PSEEN2332 type II secretion system protein XcpQ-2; signal peptide.
       0.404
Smal_2212
KEGG: pau:PA14_55460 probable type II secretion system protein.
       0.404
Smal_2213
PFAM: General secretion pathway L; KEGG: pfo:PflO1_3177 probable type II secretion system protein.
       0.404
Smal_2214
PFAM: General secretion pathway protein K; KEGG: pfl:PFL_2753 general secretion pathway protein K.
       0.404
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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