STRINGSTRING
Plim_1395 Plim_1395 Plim_1270 Plim_1270 pckA pckA argH argH Plim_0135 Plim_0135 purA purA Plim_3831 Plim_3831 Plim_1012 Plim_1012 pyrB pyrB Plim_2615 Plim_2615 Plim_3421 Plim_3421
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Plim_1395PFAM: fumarate lyase; KEGG: pap:PSPA7_6217 aspartate ammonia-lyase. (478 aa)    
Predicted Functional Partners:
Plim_1270
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
 
   
 0.948
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
   
 
 0.944
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: hypothetical protein; K01755 argininosuccinate lyase.
     
 0.913
Plim_0135
PFAM: aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gur:Gura_2501 aminotransferase, class I and II.
     
 0.907
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
     
 0.904
Plim_3831
Adenylosuccinate lyase; KEGG: proteophosphoglycan ppg3; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
 0.904
Plim_1012
PFAM: peptidase T2 asparaginase 2; KEGG: smt:Smal_0741 peptidase T2 asparaginase 2.
     
 0.902
pyrB
KEGG: sfu:Sfum_2090 aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
  0.900
Plim_2615
Asparagine synthase (glutamine-hydrolyzing).
     
  0.900
Plim_3421
Asparagine synthase (glutamine-hydrolyzing).
     
  0.900
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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