STRINGSTRING
Bphy_2274 Bphy_2274 Bphy_2272 Bphy_2272 Bphy_2273 Bphy_2273 Bphy_2275 Bphy_2275
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_2274KEGG: pap:PSPA7_6247 hypothetical protein. (137 aa)    
Predicted Functional Partners:
Bphy_2272
PFAM: FAD linked oxidase domain protein; KEGG: rso:RSc0172 hypothetical protein.
 
     0.937
Bphy_2273
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc0171 short chain dehydrogenase.
 
     0.936
Bphy_2275
PFAM: UbiA prenyltransferase; KEGG: xac:XAC3589 hypothetical protein.
 
     0.848
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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