STRINGSTRING
Ccel_2400 Ccel_2400 Ccel_2399 Ccel_2399 Ccel_1512 Ccel_1512 Ccel_1508 Ccel_1508 Ccel_1499 Ccel_1499 Ccel_1501 Ccel_1501 Ccel_1511 Ccel_1511 Ccel_1507 Ccel_1507 Ccel_1503 Ccel_1503 Ccel_1513 Ccel_1513 Ccel_1505 Ccel_1505
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2400KEGG: psp:PSPPH_1453 rhs family protein. (1333 aa)    
Predicted Functional Partners:
Ccel_2399
KEGG: cbk:CLL_A1624 SMI1 / KNR4 family.
       0.773
Ccel_1512
KEGG: noc:Noc_1865 hypothetical protein.
 
     0.634
Ccel_1508
Phage protein D; KEGG: mag:amb1891 phage protein D.
 
     0.627
Ccel_1499
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: gsu:GSU0972 AAA family ATPase.
 
     0.621
Ccel_1501
PFAM: tail sheath protein; KEGG: sgr:SGR_2066 putative phage tail sheath protein.
 
     0.617
Ccel_1511
PFAM: GPW/gp25 family protein; KEGG: gsu:GSU0986 tail lysozyme, putative.
 
     0.615
Ccel_1507
KEGG: mag:amb1890 LysM domain-containing protein.
 
     0.604
Ccel_1503
KEGG: gsu:GSU0977 hypothetical protein.
 
     0.600
Ccel_1513
KEGG: npu:Npun_F1413 hypothetical protein.
 
     0.598
Ccel_1505
TIGRFAM: conserved hypothetical protein; KEGG: gsu:GSU0979 hypothetical protein.
 
     0.593
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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