STRINGSTRING
Patl_4126 Patl_4126 Patl_4125 Patl_4125 Patl_4124 Patl_4124 Patl_0739 Patl_0739 Patl_0744 Patl_0744 Patl_0738 Patl_0738 Patl_3800 Patl_3800 Patl_3799 Patl_3799 Patl_3625 Patl_3625 Patl_2777 Patl_2777 Patl_1611 Patl_1611
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Patl_4126TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: psp:PSPPH_2271 outer membrane efflux protein. (460 aa)    
Predicted Functional Partners:
Patl_4125
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: son:SO3492 RND multidrug efflux transporter MexF.
 
 0.961
Patl_4124
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: son:SO3493 RND multidrug efflux membrane fusion protein MexE; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.957
Patl_0739
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: lpn:lpg2177 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.807
Patl_0744
PFAM: secretion protein HlyD; KEGG: rru:Rru_A0156 secretion protein HlyD.
 
 
 0.805
Patl_0738
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pca:Pcar_1100 hypothetical protein.
 
 0.801
Patl_3800
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gsu:GSU2697 multidrug resistance protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.797
Patl_3799
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: yps:YPTB0492 multidrug efflux protein, RND family.
 
 0.765
Patl_3625
PFAM: secretion protein HlyD; KEGG: pae:PA3360 probable secretion protein.
 
 
 0.640
Patl_2777
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: ade:Adeh_2972 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.575
Patl_1611
Secretion protein HlyD; PFAM: biotin/lipoyl attachment secretion protein HlyD; KEGG: rpb:RPB_0171 secretion protein HlyD.
 
 
 0.569
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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