STRINGSTRING
Smed_1638 Smed_1638 Smed_1639 Smed_1639 Smed_1637 Smed_1637 Smed_1641 Smed_1641 Smed_1642 Smed_1642 Smed_1640 Smed_1640 Smed_1636 Smed_1636
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_1638KEGG: psp:PSPPH_2395 hypothetical protein. (115 aa)    
Predicted Functional Partners:
Smed_1639
KEGG: pae:PA0643 hypothetical protein.
  
    0.822
Smed_1637
Hypothetical protein.
  
    0.789
Smed_1641
KEGG: rsp:RSP_2990 hypothetical protein.
  
    0.780
Smed_1642
KEGG: aba:Acid345_3157 hypothetical protein.
       0.770
Smed_1640
Hypothetical protein.
       0.762
Smed_1636
KEGG: sme:SMc04183 putative transmembrane protein.
       0.418
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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