AAO53720.1 protein (Pseudomonas syringae tomato)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AAO53720.1

Glycine/betaine family, ABC transporter, substrate-binding protein; See PMID:20190049 for expression data; similar to GP:15158553; identified by sequence similarity; putative. (308 aa)

Predicted Functional Partners:

AAO54007.1

0.989

AAO54006.1

0.982

AAO56549.1

0.980

AAO58699.1

0.979

AAO58698.1

0.978

AAO56548.1

0.975

AAO55142.1

0.949

AAO55120.1

0.918

AAO58697.1

0.917

AAO56547.1

0.914

Your Current Organism:

Pseudomonas syringae tomato

NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAO53720.1	AAO54006.1	PSPTO_0166	PSPTO_0462	Glycine/betaine family, ABC transporter, substrate-binding protein; See PMID:20190049 for expression data; similar to GP:15158553; identified by sequence similarity; putative.	glycine/betaine/L-proline ABC transporter, ATP-binding subunit.	0.982
AAO53720.1	AAO54007.1	PSPTO_0166	PSPTO_0463	Glycine/betaine family, ABC transporter, substrate-binding protein; See PMID:20190049 for expression data; similar to GP:15158553; identified by sequence similarity; putative.	glycine/betaine/L-proline ABC transporter, permease protein.	0.989
AAO53720.1	AAO55120.1	PSPTO_0166	PSPTO_1600	Glycine/betaine family, ABC transporter, substrate-binding protein; See PMID:20190049 for expression data; similar to GP:15158553; identified by sequence similarity; putative.	ABC transporter, periplasmic substrate-binding protein, putative; See PMID:20190049 for expression data; similar to GP:15159499; identified by sequence similarity; putative.	0.918
AAO53720.1	AAO55142.1	PSPTO_0166	PSPTO_1622	Glycine/betaine family, ABC transporter, substrate-binding protein; See PMID:20190049 for expression data; similar to GP:15158553; identified by sequence similarity; putative.	Glycine betaine-binding protein, putative.	0.949
AAO53720.1	AAO56547.1	PSPTO_0166	PSPTO_3058	Glycine/betaine family, ABC transporter, substrate-binding protein; See PMID:20190049 for expression data; similar to GP:15158553; identified by sequence similarity; putative.	Glycine betaine ABC transporter, periplasmic glycine betaine-binding protein; Similar to SP:P14177, GB:M94345, GB:U12026, SP:P40121, PID:187456, and PID:515505; identified by sequence similarity; putative.	0.914
AAO53720.1	AAO56548.1	PSPTO_0166	PSPTO_3059	Glycine/betaine family, ABC transporter, substrate-binding protein; See PMID:20190049 for expression data; similar to GP:15158553; identified by sequence similarity; putative.	Glycine betaine/L-proline ABC transporter, permease protein.	0.975
AAO53720.1	AAO56549.1	PSPTO_0166	PSPTO_3060	Glycine/betaine family, ABC transporter, substrate-binding protein; See PMID:20190049 for expression data; similar to GP:15158553; identified by sequence similarity; putative.	Glycine betaine/L-proline ABC transporter, ATP-binding protein.	0.980
AAO53720.1	AAO58697.1	PSPTO_0166	PSPTO_5271	Glycine/betaine family, ABC transporter, substrate-binding protein; See PMID:20190049 for expression data; similar to GP:15158553; identified by sequence similarity; putative.	Histidine transporter, periplasmic histidine-binding protein.	0.917
AAO53720.1	AAO58698.1	PSPTO_0166	PSPTO_5272	Glycine/betaine family, ABC transporter, substrate-binding protein; See PMID:20190049 for expression data; similar to GP:15158553; identified by sequence similarity; putative.	Histidine ABC transporter, permease protein, putative.	0.978
AAO53720.1	AAO58699.1	PSPTO_0166	PSPTO_5273	Glycine/betaine family, ABC transporter, substrate-binding protein; See PMID:20190049 for expression data; similar to GP:15158553; identified by sequence similarity; putative.	Histidine ABC transporter, ATP-binding protein, putative.	0.979
AAO54006.1	AAO53720.1	PSPTO_0462	PSPTO_0166	glycine/betaine/L-proline ABC transporter, ATP-binding subunit.	Glycine/betaine family, ABC transporter, substrate-binding protein; See PMID:20190049 for expression data; similar to GP:15158553; identified by sequence similarity; putative.	0.982
AAO54006.1	AAO54007.1	PSPTO_0462	PSPTO_0463	glycine/betaine/L-proline ABC transporter, ATP-binding subunit.	glycine/betaine/L-proline ABC transporter, permease protein.	0.998
AAO54006.1	AAO55120.1	PSPTO_0462	PSPTO_1600	glycine/betaine/L-proline ABC transporter, ATP-binding subunit.	ABC transporter, periplasmic substrate-binding protein, putative; See PMID:20190049 for expression data; similar to GP:15159499; identified by sequence similarity; putative.	0.965
AAO54006.1	AAO55142.1	PSPTO_0462	PSPTO_1622	glycine/betaine/L-proline ABC transporter, ATP-binding subunit.	Glycine betaine-binding protein, putative.	0.982
AAO54006.1	AAO56547.1	PSPTO_0462	PSPTO_3058	glycine/betaine/L-proline ABC transporter, ATP-binding subunit.	Glycine betaine ABC transporter, periplasmic glycine betaine-binding protein; Similar to SP:P14177, GB:M94345, GB:U12026, SP:P40121, PID:187456, and PID:515505; identified by sequence similarity; putative.	0.964
AAO54006.1	AAO56548.1	PSPTO_0462	PSPTO_3059	glycine/betaine/L-proline ABC transporter, ATP-binding subunit.	Glycine betaine/L-proline ABC transporter, permease protein.	0.985
AAO54006.1	AAO56549.1	PSPTO_0462	PSPTO_3060	glycine/betaine/L-proline ABC transporter, ATP-binding subunit.	Glycine betaine/L-proline ABC transporter, ATP-binding protein.	0.910
AAO54006.1	AAO58697.1	PSPTO_0462	PSPTO_5271	glycine/betaine/L-proline ABC transporter, ATP-binding subunit.	Histidine transporter, periplasmic histidine-binding protein.	0.968
AAO54006.1	AAO58698.1	PSPTO_0462	PSPTO_5272	glycine/betaine/L-proline ABC transporter, ATP-binding subunit.	Histidine ABC transporter, permease protein, putative.	0.985
AAO54006.1	AAO58699.1	PSPTO_0462	PSPTO_5273	glycine/betaine/L-proline ABC transporter, ATP-binding subunit.	Histidine ABC transporter, ATP-binding protein, putative.	0.906

page 1 of 6

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About