STRINGSTRING
AAO53722.1 AAO53722.1 cfa6 cfa6 AAO56946.1 AAO56946.1 AAO53721.1 AAO53721.1 nuoM nuoM AAO53719.1 AAO53719.1 sbcD sbcD AAO53720.1 AAO53720.1 cysN/C cysN/C AAO55525.1 AAO55525.1 AAO55569.1 AAO55569.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AAO53722.1Sulfate transporter family protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03594. (522 aa)    
Predicted Functional Partners:
cfa6
Coronafacic acid polyketide synthase I; This gene is the first of two multimodular polyketide synthetases involved in the biosynthesis of coronafacic acid. This synthetase is proposed to receive CPC (2-carboxy-2-cyclopentenone) from an acyl carrier protein (cfa1), it then adds a buyrate group and then completely reduces the ketone of the (former) carboxylate group. The resulting product is then passed to the second polyketide synthetase (cfa7); similar to GP:13346874; identified by sequence similarity; putative; see PMID:20190049 for expression data; This gene is the first of two multi [...]
   
 
 0.609
AAO56946.1
Monovalent cation:proton antiporter, putative; Similar to GP:15155444, and GP:1072395; identified by sequence similarity; putative.
 
  
 0.574
AAO53721.1
Protein of unknown function; Identified by Glimmer2; putative; see PMID:20190049 for expression data; identified by Glimmer.
       0.568
nuoM
NADH dehydrogenase I, M subunit; See PMID:20190049 for expression data.
  
 
 0.513
AAO53719.1
Sulfatase family protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00884.
     
 0.492
sbcD
Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
   0.492
AAO53720.1
Glycine/betaine family, ABC transporter, substrate-binding protein; See PMID:20190049 for expression data; similar to GP:15158553; identified by sequence similarity; putative.
       0.453
cysN/C
Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
   
  
 0.429
AAO55525.1
Identified by match to PFAM protein family HMM PF02368.
    
   0.400
AAO55569.1
Ankyrin domain protein; See PMID:20190049 for expression data.
    
 
 0.400
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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