STRINGSTRING
AAO53730.1 AAO53730.1 pilQ pilQ pilN pilN pilO pilO pilM pilM pilP pilP trpS trpS pilZ pilZ AAO56879.1 AAO56879.1 AAO54352.1 AAO54352.1 AAO54357.1 AAO54357.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AAO53730.1LysM domain protein; Similar to GB:L21196, and PID:347174; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to GB:L21196, and PID:347174, identified by sequence similarity, putative. (341 aa)    
Predicted Functional Partners:
pilQ
Type IV pilus biogenesis protein PilQ; See PMID:20190049 for expression data.
 
 
 
 0.945
pilN
Type IV pilus biogenesis protein PilN; See PMID:20190049 for expression data.
  
 
   0.874
pilO
Type IV pilus biogenesis protein PilO; See PMID:20190049 for expression data; similar to GB:Z11899, GB:Z11898, GB:Z11900, GB:Z21964, GB:Z21963, SP:P31359, SP:Q01860, and PID:35169; identified by sequence similarity; putative.
  
 
   0.873
pilM
Type IV pilus biogenesis protein PilM; See PMID:20190049 for expression data.
  
 
   0.871
pilP
Type IV pilus biogenesis protein PilP; See PMID:20190049 for expression data; similar to GB:M86917, SP:P22059, and PID:189403; identified by sequence similarity; putative.
 
 
   0.860
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   0.825
pilZ
Type IV pilus biogenesis protein PilZ; See PMID:20190049 for expression data.
  
    0.778
AAO56879.1
Baseplate assembly protein W; Similar to GP:6723254; identified by sequence similarity; putative.
  
   0.771
AAO54352.1
Type IV pilus biogenesis protein.
  
   
 0.751
AAO54357.1
Type IV pilus-associated protein, putative; See PMID:20190049 for expression data.
  
     0.742
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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