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gabT-2 gabT-2 gabD-2 gabD-2 AAO54060.1 AAO54060.1 gabD-1 gabD-1 AAO56162.1 AAO56162.1 gabD-3 gabD-3 gabT-1 gabT-1 AAO53646.1 AAO53646.1 AAO55399.1 AAO55399.1 pcD pcD AAO57114.1 AAO57114.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
gabT-24-aminobutyrate aminotransferase; See PMID:20190049 for expression data; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (426 aa)    
Predicted Functional Partners:
gabD-2
Succinate-semialdehyde dehydrogenase; See PMID:20190049 for expression data; Belongs to the aldehyde dehydrogenase family.
 
 0.954
AAO54060.1
Hydrolase, carbon-nitrogen family.
 
 
 0.935
gabD-1
Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.919
AAO56162.1
Aldehyde dehydrogenase family protein.
 
 0.919
gabD-3
Succinate-semialdehyde dehydrogenase; See PMID:20190049 for expression data; similar to GP:15140237, and SP:P25526; identified by sequence similarity; putative.
 
 0.919
gabT-1
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.905
AAO53646.1
Aldehyde dehydrogenase family protein; Similar to SP:P23883, GB:M11147, GB:M10119, GB:M12938, GB:X03742, GB:X03743, SP:P02792, PID:1340145, PID:1340146, PID:182514, PID:182516, PID:182518, PID:2230869, and PID:28519; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to SP:P23883, GB:M11147, GB:M10119, GB:M12938, GB:X03742, GB:X03743, SP:P02792, PID:1340145, PID:1340146, PID:182514, PID:182516, PID:182518, PID:2230869, and PID:28519, identified by sequence similarity, putative; Belongs to the aldehyde dehydrogenase family.
 
 0.838
AAO55399.1
Aldehyde dehydrogenase family protein; Similar to GP:13309884; identified by sequence similarity; putative; Belongs to the aldehyde dehydrogenase family.
 
 0.838
pcD
Piperideine-6-carboxylate dehydrogenase; Similar to GP:15076316, and GP:11990463; identified by sequence similarity; putative; Belongs to the aldehyde dehydrogenase family.
  
 0.838
AAO57114.1
Identified by match to TIGR protein family HMM TIGR01804.
 
 0.838
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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