STRINGSTRING
AAO53938.1 AAO53938.1 AAO53939.1 AAO53939.1 AAO53940.1 AAO53940.1 AAO53941.1 AAO53941.1 etfB-1 etfB-1 soxG-1 soxG-1 soxD-1 soxD-1 AAO53945.1 AAO53945.1 soxB-1 soxB-1 AAO53946.1 AAO53946.1 soxA-1 soxA-1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO53938.1Renal dipeptidase family protein. (325 aa)    
Predicted Functional Partners:
AAO53939.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.961
AAO53940.1
NADH:flavin oxidoreductase/NADH oxidase family protein.
 
    0.902
AAO53941.1
Iron-sulfur cluster-binding protein.
 
    0.867
etfB-1
Electron transfer flavoprotein, beta subunit.
 
    0.866
soxG-1
Sarcosine oxidase, gamma subunit; Similar to SP:Q46338, GB:U11053, GB:U17298, GB:L36130, SP:P41145, PID:532060, PID:595933, PID:596070, PID:598185, and PID:722618; identified by sequence similarity; putative.
 
    0.800
soxD-1
Sarcosine oxidase, delta subunit; Similar to SP:Q46336, GB:U11053, GB:U17298, GB:L36130, SP:P41145, PID:532060, PID:595933, PID:596070, PID:598185, and PID:722618; identified by sequence similarity; putative.
 
    0.766
AAO53945.1
Iron-sulfur cluster-binding protein, Rieske family; Identified by match to PFAM protein family HMM PF00848.
  
    0.738
soxB-1
Sarcosine oxidase, beta subunit; Similar to GP:14023472, and SP:P40875; identified by sequence similarity; putative.
  
    0.683
AAO53946.1
Iron-sulfur cluster-binding protein; Similar to GP:15073802; identified by sequence similarity; putative.
  
    0.661
soxA-1
Sarcosine oxidase, alpha subunit; Similar to SP:Q46337; identified by sequence similarity; putative; Belongs to the GcvT family.
 
    0.641
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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