STRINGSTRING
AAO53959.1 AAO53959.1 AAO58384.1 AAO58384.1 AAO54514.1 AAO54514.1 AAO54509.1 AAO54509.1 AAO53955.1 AAO53955.1 AAO57771.1 AAO57771.1 mutM mutM algX algX AAO55366.1 AAO55366.1 algG algG AAO58032.1 AAO58032.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
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Experiments
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[Homology]
Score
AAO53959.1Conserved hypothetical protein; Identified by Glimmer2; putative. (112 aa)    
Predicted Functional Partners:
AAO58384.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:9951239; identified by sequence similarity; putative.
  
     0.677
AAO54514.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.601
AAO54509.1
Pentapeptide repeat domain protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00805.
  
     0.596
AAO53955.1
Membrane protein, putative; Similar to GP:13661672; identified by sequence similarity; putative.
  
     0.592
AAO57771.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.590
mutM
formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
       0.588
algX
Alginate biosynthesis protein AlgX; Plays two roles in the biosynthesis of the exopolysaccharide alginate: protects alginate from degradation as the polymer traverses the periplasm, and also plays a role in its O-acetylation. Probably has acetyltransferase activity in vivo (By similarity).
  
     0.586
AAO55366.1
Transcriptional repressor, putative; See PMID:20190049 for expression data; similar to GP:6759952; identified by sequence similarity; putative.
  
     0.580
algG
Alginate biosynthesis protein AlgG; Catalyzes the epimerization of beta-D-mannuronate to alpha-L- guluronate during the synthesis of the linear polysaccharide alginate. In addition, is part of a periplasmic protein complex that protects alginate from degradation by AlgL by channeling the newly formed alginate polymer through a scaffold that transfers the alginate polymer through the periplasmic space to the outer membrane secretin AlgE (By similarity).
  
     0.576
AAO58032.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.568
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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