Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AAO55332.1 | hopAS1 | PSPTO_1812 | PSPTO_0474 | Conserved protein of unknown function; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | Type III effector HopAS1; This region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by sequence similarity to the N-terminal regions of HopAS1 in Pseudomonas syringae phaseolicola; previously known as ORF01152 (PMID11854524; Fouts et al, 2002). | 0.611 |
| ABD93120.1 | hopAS1 | PSPTO_5616 | PSPTO_0474 | Conserved hypothetical protein; Similar to gene downstream of PSPPH4735. | Type III effector HopAS1; This region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by sequence similarity to the N-terminal regions of HopAS1 in Pseudomonas syringae phaseolicola; previously known as ORF01152 (PMID11854524; Fouts et al, 2002). | 0.651 |
| gyrB | hopAS1 | PSPTO_0004 | PSPTO_0474 | DNA gyrase, subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | Type III effector HopAS1; This region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by sequence similarity to the N-terminal regions of HopAS1 in Pseudomonas syringae phaseolicola; previously known as ORF01152 (PMID11854524; Fouts et al, 2002). | 0.448 |
| gyrB | polI | PSPTO_0004 | PSPTO_0344 | DNA gyrase, subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.670 |
| gyrB | topA | PSPTO_0004 | PSPTO_3514 | DNA gyrase, subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.526 |
| hopAO1 | hopAS1 | PSPTO_4722 | PSPTO_0474 | Type III effector HopAO1; Effector showing tyrosine-phosphatase activity required for host defense suppression. Functions inside plant cells causing suppression of HR (hypersensitive response), PR1 gene expression and oxidative burst probably by interfering with a MAPK (mitogen-activated protein kinase) pathway. MAPK cascades are known to activate defense- related transcription factors. Inhibits plant pattern-recognition receptors (PRRs) activation. | Type III effector HopAS1; This region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by sequence similarity to the N-terminal regions of HopAS1 in Pseudomonas syringae phaseolicola; previously known as ORF01152 (PMID11854524; Fouts et al, 2002). | 0.443 |
| hopAO1 | hopI1 | PSPTO_4722 | PSPTO_4776 | Type III effector HopAO1; Effector showing tyrosine-phosphatase activity required for host defense suppression. Functions inside plant cells causing suppression of HR (hypersensitive response), PR1 gene expression and oxidative burst probably by interfering with a MAPK (mitogen-activated protein kinase) pathway. MAPK cascades are known to activate defense- related transcription factors. Inhibits plant pattern-recognition receptors (PRRs) activation. | Type III effector HopI1; Previously known as HopPmaI (PMID11872842; Guttman et al, 2002); see PMID:20190049 for expression data; similar to GP:19071496; identified by sequence similarity; putative. | 0.442 |
| hopAS1 | AAO55332.1 | PSPTO_0474 | PSPTO_1812 | Type III effector HopAS1; This region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by sequence similarity to the N-terminal regions of HopAS1 in Pseudomonas syringae phaseolicola; previously known as ORF01152 (PMID11854524; Fouts et al, 2002). | Conserved protein of unknown function; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.611 |
| hopAS1 | ABD93120.1 | PSPTO_0474 | PSPTO_5616 | Type III effector HopAS1; This region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by sequence similarity to the N-terminal regions of HopAS1 in Pseudomonas syringae phaseolicola; previously known as ORF01152 (PMID11854524; Fouts et al, 2002). | Conserved hypothetical protein; Similar to gene downstream of PSPPH4735. | 0.651 |
| hopAS1 | gyrB | PSPTO_0474 | PSPTO_0004 | Type III effector HopAS1; This region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by sequence similarity to the N-terminal regions of HopAS1 in Pseudomonas syringae phaseolicola; previously known as ORF01152 (PMID11854524; Fouts et al, 2002). | DNA gyrase, subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.448 |
| hopAS1 | hopAO1 | PSPTO_0474 | PSPTO_4722 | Type III effector HopAS1; This region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by sequence similarity to the N-terminal regions of HopAS1 in Pseudomonas syringae phaseolicola; previously known as ORF01152 (PMID11854524; Fouts et al, 2002). | Type III effector HopAO1; Effector showing tyrosine-phosphatase activity required for host defense suppression. Functions inside plant cells causing suppression of HR (hypersensitive response), PR1 gene expression and oxidative burst probably by interfering with a MAPK (mitogen-activated protein kinase) pathway. MAPK cascades are known to activate defense- related transcription factors. Inhibits plant pattern-recognition receptors (PRRs) activation. | 0.443 |
| hopAS1 | hopI1 | PSPTO_0474 | PSPTO_4776 | Type III effector HopAS1; This region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by sequence similarity to the N-terminal regions of HopAS1 in Pseudomonas syringae phaseolicola; previously known as ORF01152 (PMID11854524; Fouts et al, 2002). | Type III effector HopI1; Previously known as HopPmaI (PMID11872842; Guttman et al, 2002); see PMID:20190049 for expression data; similar to GP:19071496; identified by sequence similarity; putative. | 0.447 |
| hopAS1 | hopR1 | PSPTO_0474 | PSPTO_0883 | Type III effector HopAS1; This region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by sequence similarity to the N-terminal regions of HopAS1 in Pseudomonas syringae phaseolicola; previously known as ORF01152 (PMID11854524; Fouts et al, 2002). | Type III effector HopR1; Previously known as HolPtoR; see PMID:20190049 for expression data; similar to GP:17431754, and GP:19071522; identified by sequence similarity; putative. | 0.459 |
| hopAS1 | hopY1 | PSPTO_0474 | PSPTO_0061 | Type III effector HopAS1; This region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by sequence similarity to the N-terminal regions of HopAS1 in Pseudomonas syringae phaseolicola; previously known as ORF01152 (PMID11854524; Fouts et al, 2002). | Type III effector HopY1; Previously known as HolPtoY (PMID11872842; Guttman et al, 2002) and ORF11 (PMID11854524; Fouts et al, 2002); similar to GP:19071534; identified by sequence similarity; putative; see PMID:20190049 for expression data; Previously known as HolPtoY; PMID1187284, Guttman et al, 2002; and ORF11; PMID11854524, Fouts et al, 2002; ., see PMID:20190049 for expression data; similar to GP:19071534, identified by sequence similarity, putative. | 0.457 |
| hopAS1 | parE | PSPTO_0474 | PSPTO_4963 | Type III effector HopAS1; This region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by sequence similarity to the N-terminal regions of HopAS1 in Pseudomonas syringae phaseolicola; previously known as ORF01152 (PMID11854524; Fouts et al, 2002). | DNA topoisomerase IV, B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. | 0.448 |
| hopAS1 | polI | PSPTO_0474 | PSPTO_0344 | Type III effector HopAS1; This region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by sequence similarity to the N-terminal regions of HopAS1 in Pseudomonas syringae phaseolicola; previously known as ORF01152 (PMID11854524; Fouts et al, 2002). | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.592 |
| hopAS1 | topA | PSPTO_0474 | PSPTO_3514 | Type III effector HopAS1; This region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by sequence similarity to the N-terminal regions of HopAS1 in Pseudomonas syringae phaseolicola; previously known as ORF01152 (PMID11854524; Fouts et al, 2002). | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.431 |
| hopI1 | hopAO1 | PSPTO_4776 | PSPTO_4722 | Type III effector HopI1; Previously known as HopPmaI (PMID11872842; Guttman et al, 2002); see PMID:20190049 for expression data; similar to GP:19071496; identified by sequence similarity; putative. | Type III effector HopAO1; Effector showing tyrosine-phosphatase activity required for host defense suppression. Functions inside plant cells causing suppression of HR (hypersensitive response), PR1 gene expression and oxidative burst probably by interfering with a MAPK (mitogen-activated protein kinase) pathway. MAPK cascades are known to activate defense- related transcription factors. Inhibits plant pattern-recognition receptors (PRRs) activation. | 0.442 |
| hopI1 | hopAS1 | PSPTO_4776 | PSPTO_0474 | Type III effector HopI1; Previously known as HopPmaI (PMID11872842; Guttman et al, 2002); see PMID:20190049 for expression data; similar to GP:19071496; identified by sequence similarity; putative. | Type III effector HopAS1; This region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by sequence similarity to the N-terminal regions of HopAS1 in Pseudomonas syringae phaseolicola; previously known as ORF01152 (PMID11854524; Fouts et al, 2002). | 0.447 |
| hopI1 | hopR1 | PSPTO_4776 | PSPTO_0883 | Type III effector HopI1; Previously known as HopPmaI (PMID11872842; Guttman et al, 2002); see PMID:20190049 for expression data; similar to GP:19071496; identified by sequence similarity; putative. | Type III effector HopR1; Previously known as HolPtoR; see PMID:20190049 for expression data; similar to GP:17431754, and GP:19071522; identified by sequence similarity; putative. | 0.516 |
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